Sequence Similarity Clusters for the Entities in PDB 5VH4

Entity #1 | Chains: A,H
Infliximab Fab Heavy Chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5619
95 % 2 7 6234 Flexibility: Medium
Max RMSD: 5.0, Avg RMSD: 3.1
PDBFlex
90 % 2 11 4685
70 % 424 2928 1
50 % 450 3079 1
40 % 450 3079 1
30 % 889 6153 1
Entity #2 | Chains: B,L
Infliximab Fab Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5558
95 % 2 7 6288 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 6 44 716
70 % 345 2391 2
50 % 433 3030 2
40 % 433 3030 2
30 % 890 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures