5VFU

Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome


Sequence Similarity Clusters for the Entities in PDB 5VFU

Entity #1 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 911 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1906
95 % 21 31 2127
90 % 21 31 2164
70 % 22 32 2133
50 % 22 32 2184
40 % 34 56 1229
30 % 34 56 1272
Entity #10 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6451
95 % 10 11 7687
90 % 10 11 7647
70 % 10 11 7463
50 % 10 11 7026
40 % 10 11 6782
30 % 21 35 2147
Entity #11 | Chains: e
Sem1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 33 1482
95 % 23 33 1922
90 % 23 33 1959
70 % 23 33 2010
50 % 25 35 1917
40 % 25 35 1948
30 % 25 35 1985
Entity #12 | Chains: A
26S protease regulatory subunit 7 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1902
95 % 6 6 15914
90 % 6 6 15631
70 % 6 6 14445
50 % 6 6 11572
40 % 99 147 369
30 % 99 147 383
Entity #13 | Chains: B
26S protease regulatory subunit 4 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 15024
95 % 6 6 15682
90 % 6 6 15404
70 % 16 16 5088
50 % 54 77 576
40 % 100 147 369
30 % 100 147 383
Entity #14 | Chains: C
26S protease regulatory subunit 8 protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 30 1714
95 % 21 30 2251
90 % 21 30 2264
70 % 33 55 1208
50 % 55 77 576
40 % 101 147 369
30 % 101 147 383
Entity #15 | Chains: D
26S protease regulatory subunit 6B protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1926
95 % 21 31 2089
90 % 21 31 2173
70 % 21 31 2191
50 % 33 55 1227
40 % 33 55 1266
30 % 57 101 682
Entity #16 | Chains: E
26S protease regulatory subunit 10B protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1890
95 % 21 31 2080
90 % 21 31 2134
70 % 21 31 2181
50 % 27 49 1394
40 % 102 147 369
30 % 102 147 383
Entity #17 | Chains: F
26S protease regulatory subunit 6A protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1933
95 % 9 9 9660
90 % 9 9 9928
70 % 21 33 2204
50 % 9 9 8639
40 % 103 147 369
30 % 103 147 383
Entity #18 | Chains: G,g
Proteasome subunit alpha type-6 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 48 487
95 % 40 52 567
90 % 40 52 591
70 % 40 52 620
50 % 337 361 42
40 % 342 367 45
30 % 2111 2273 2
Entity #19 | Chains: H,h
Proteasome subunit alpha type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 43 513
95 % 39 51 565
90 % 39 51 592
70 % 39 51 623
50 % 42 55 597
40 % 341 366 43
30 % 2112 2273 2
Entity #2 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1896
95 % 21 31 2144
90 % 21 31 2182
70 % 21 31 2249
50 % 21 31 2235
40 % 21 31 2318
30 % 21 31 2328
Entity #20 | Chains: I,i
Proteasome subunit alpha type-4 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 43 514
95 % 39 51 566
90 % 39 51 590
70 % 39 51 619
50 % 339 364 37
40 % 341 366 44
30 % 2113 2273 2
Entity #21 | Chains: J,j
Proteasome subunit alpha type-7 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 42 537
95 % 39 52 560
90 % 39 52 583
70 % 39 52 616
50 % 338 363 38
40 % 362 393 17
30 % 2114 2273 2
Entity #22 | Chains: K,k
Proteasome subunit alpha type-5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 46 454
95 % 39 51 563
90 % 39 51 585
70 % 39 51 612
50 % 340 365 36
40 % 340 365 46
30 % 2115 2273 2
Entity #23 | Chains: L,l
Proteasome subunit alpha type-1 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 42 532
95 % 39 52 556
90 % 39 52 577
70 % 39 52 607
50 % 39 52 654
40 % 39 52 681
30 % 39 52 725
Entity #24 | Chains: M,m
Proteasome subunit alpha type-3 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 44 440
95 % 40 52 470
90 % 40 52 497
70 % 40 52 530
50 % 85 97 323
40 % 87 99 328
30 % 2116 2273 2
Entity #25 | Chains: N,n
Proteasome subunit beta type-6 protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 24 968
95 % 24 26 1114
90 % 24 26 1154
70 % 24 26 1175
50 % 24 26 1204
40 % 24 26 1241
30 % 24 26 1283
Entity #26 | Chains: O,o
Proteasome subunit beta type-7 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 23 1014
95 % 34 36 756
90 % 34 36 786
70 % 34 36 838
50 % 324 339 53
40 % 324 339 71
30 % 324 339 72
Entity #27 | Chains: P,p
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 42 538
95 % 39 51 555
90 % 39 51 587
70 % 39 51 615
50 % 333 357 43
40 % 338 363 47
30 % 338 363 48
Entity #28 | Chains: Q,q
Proteasome subunit beta type-2 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 42 534
95 % 39 51 568
90 % 39 51 589
70 % 39 51 617
50 % 39 51 668
40 % 335 360 48
30 % 337 362 49
Entity #29 | Chains: R,r
Proteasome subunit beta type-5 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 25 921
95 % 24 27 1086
90 % 24 27 1123
70 % 309 312 27
50 % 312 316 62
40 % 312 316 81
30 % 332 339 31
Entity #3 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 28 1850
95 % 22 32 2019
90 % 22 32 2068
70 % 22 32 2118
50 % 22 32 2172
40 % 33 56 1242
30 % 33 56 1287
Entity #30 | Chains: S,s
Proteasome subunit beta type-1 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 25 932
95 % 27 29 981
90 % 27 29 1022
70 % 27 29 1051
50 % 27 29 1085
40 % 27 29 1118
30 % 27 29 1162
Entity #31 | Chains: T,t
Proteasome subunit beta type-4 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 24 975
95 % 27 29 998
90 % 27 29 1040
70 % 27 29 1065
50 % 27 29 1101
40 % 29 31 1067
30 % 29 31 1114
Entity #32 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 29 1769
95 % 28 33 1973
90 % 28 33 2023
70 % 25 30 2358
50 % 25 30 2375
40 % 36 53 1329
30 % 36 53 1363
Entity #4 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 32 1578
95 % 22 32 2024
90 % 22 32 2073
70 % 24 34 2011
50 % 24 34 2067
40 % 24 34 2055
30 % 24 34 2094
Entity #5 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 378 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 28 1879
95 % 22 32 2065
90 % 22 32 2121
70 % 22 32 2172
50 % 22 32 2228
40 % 22 32 2244
30 % 33 56 1303
Entity #6 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 7316
95 % 11 11 8139
90 % 11 11 8068
70 % 11 11 7823
50 % 17 17 4547
40 % 17 17 4452
30 % 17 17 4327
Entity #7 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 54406
95 % 22 32 2036
90 % 22 32 2081
70 % 22 32 2134
50 % 22 32 2185
40 % 22 32 2210
30 % 33 57 1273
Entity #8 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 7329
95 % 11 11 8002
90 % 11 11 7898
70 % 11 11 7692
50 % 18 18 4438
40 % 19 19 4047
30 % 19 19 3938
Entity #9 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 32 1557
95 % 22 32 2040
90 % 22 32 2086
70 % 22 32 2137
50 % 34 57 1189
40 % 34 57 1231
30 % 34 57 1274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures