Sequence Similarity Clusters for the Entities in PDB 5V1Z

Entity #1 | Chains: A,B
Proteasomal ubiquitin receptor ADRM1 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 17041
95 % 3 4 13043 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 4 12848
70 % 3 4 12240
50 % 3 4 11160
40 % 3 4 10497
30 % 3 4 9689
Entity #2 | Chains: C,D
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 393 4
95 % 100 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 104 504 6
70 % 114 555 9
50 % 116 570 10
40 % 116 574 12
30 % 121 595 19
Entity #3 | Chains: E,F
26S proteasome non-ATPase regulatory subunit 1 protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54998
95 % 1 1 38894
90 % 1 1 37057
70 % 1 1 32974
50 % 1 1 28680
40 % 1 1 26079
30 % 1 1 23179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures