Sequence Similarity Clusters for the Entities in PDB 5V1Y

Entity #1 | Chains: A,B
Proteasomal ubiquitin receptor ADRM1 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14952
95 % 1 4 13074 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 4 12901
70 % 1 4 12209
50 % 1 4 11177
40 % 1 4 10507
30 % 1 4 9700
Entity #2 | Chains: C,D
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 393 4
95 % 15 490 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 15 504 6
70 % 17 555 9
50 % 17 570 10
40 % 17 574 12
30 % 17 591 20
Entity #3 | Chains: E,F
26S proteasome non-ATPase regulatory subunit 1 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures