5V1A

Structure of S. cerevisiae Ulp2:Csm1 complex


Sequence Similarity Clusters for the Entities in PDB 5V1A

Entity #1 | Chains: B
Ubiquitin-like-specific protease 2 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68164
95 % 1 1 54356
90 % 1 1 44443
70 % 1 1 44788
50 % 1 1 38671
40 % 1 1 34951
30 % 1 1 30828
Entity #2 | Chains: A
Monopolin complex subunit CSM1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10563
95 % 3 5 7330 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 3 5 7324
70 % 3 5 7512
50 % 5 8 4607
40 % 5 8 4514
30 % 5 8 4373

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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