Sequence Similarity Clusters for the Entities in PDB 5U4R

Entity #1 | Chains: A,H
VRC 315 53-1A09 Fab Heavy chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41867
95 % 1 1 31493 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 36180
70 % 231 2943 1
50 % 249 3094 1
40 % 249 3094 1
30 % 489 6183 1
Entity #2 | Chains: B,L
VRC 315 53-1A09 Fab Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42666
95 % 1 1 31492 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 55 784 2
70 % 184 2399 2
50 % 234 3045 2
40 % 234 3045 2
30 % 490 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures