5U1C

Structure of tetrameric HIV-1 Strand Transfer Complex Intasome


Sequence Similarity Clusters for the Entities in PDB 5U1C

Entity #1 | Chains: A,B,C,D
HIV-1 Integrase, Sso7d chimera protein, length: 383 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27566
95 % 6 6 3186
90 % 6 6 3264
70 % 8 8 1653
50 % 8 8 1694
40 % 8 8 1732
30 % 8 8 1758
Entity #2 | Chains: G,H
DNA (11-MER) dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,I
DNA (23-MER) dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,J
DNA (37-MER) dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures