Sequence Similarity Clusters for the Entities in PDB 5TXZ

Entity #1 | Chains: A
DNA-directed DNA/RNA polymerase mu protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 1386
95 % 14 67 939 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 14 67 982
70 % 14 68 955
50 % 14 68 998
40 % 14 68 1035
30 % 14 506 98
Entity #2 | Chains: T
DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3') dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*CP*GP*TP*AP*T)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA (5'-D(P*GP*CP*CP*G)-3') dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures