Sequence Similarity Clusters for the Entities in PDB 5TR4

Entity #1 | Chains: A,C
Ubiquitin-activating enzyme E1 1 protein, length: 1017 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41485
95 % 4 7 5982 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 4 7 5873
70 % 4 7 5858
50 % 5 14 2934
40 % 5 14 2899
30 % 5 14 2872
Entity #2 | Chains: B,D
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 1891
95 % 189 490 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 196 504 6
70 % 218 555 9
50 % 221 570 10
40 % 221 574 12
30 % 227 591 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures