Sequence Similarity Clusters for the Entities in PDB 5OXV

Entity #1 | Chains: J
DNA STRAND 1 (601-based sequence model) dna, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,N,R
Histone H2B 1.1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 85 195
95 % 119 164 110 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 150 233 67
70 % 158 244 68
50 % 162 251 91
40 % 162 251 107
30 % 162 251 106
Entity #3 | Chains: C,G,M,Q
Histone H2A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 122 112
95 % 152 241 52 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 147 224 70
70 % 150 230 74
50 % 150 230 99
40 % 150 230 118
30 % 150 230 119
Entity #4 | Chains: B,F,L,P
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 156 239 37
95 % 175 261 34 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 182 270 37
70 % 183 269 44
50 % 183 269 79
40 % 183 269 98
30 % 183 269 97
Entity #5 | Chains: A,E,K,O
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 76 207
95 % 162 236 59 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 168 244 62
70 % 171 247 59
50 % 174 257 87
40 % 174 257 104
30 % 174 257 103
Entity #6 | Chains: I
DNA STRAND 2 (601-based sequence model) dna, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures