Sequence Similarity Clusters for the Entities in PDB 5ODB

Entity #1 | Chains: A
D10 Fab fragment - heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64493
95 % 1 1 50278
90 % 1 1 47970
70 % 75 2943 1
50 % 85 3094 1
40 % 85 3094 1
30 % 163 6183 1
Entity #2 | Chains: B
D10 Fab fragment - light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64171
95 % 1 1 50651
90 % 1 1 47619
70 % 15 609 7
50 % 75 3045 2
40 % 75 3045 2
30 % 164 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures