Sequence Similarity Clusters for the Entities in PDB 5OD8

Entity #1 | Chains: A
B2 Fab fragment - heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68056
95 % 1 1 46069
90 % 15 47 860
70 % 1014 3001 1
50 % 2119 6273 1
40 % 2119 6273 1
30 % 2134 6319 1
Entity #2 | Chains: B
B2 Fab fragment - Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60977
95 % 71 232 68 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 265 805 2
70 % 818 2435 2
50 % 2120 6273 1
40 % 2120 6273 1
30 % 2135 6319 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures