Sequence Similarity Clusters for the Entities in PDB 5O44

Entity #1 | Chains: A,E
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52281
95 % 332 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 340 501 6
70 % 376 544 9
50 % 386 564 11
40 % 386 568 14
30 % 397 588 19
Entity #2 | Chains: B,C
Polyubiquitin-B protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 388 4
95 % 333 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 341 501 6
70 % 377 544 9
50 % 387 564 11
40 % 387 568 14
30 % 398 588 19
Entity #3 | Chains: D,F
Polyubiquitin-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4989
95 % 334 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 342 501 6
70 % 378 544 9
50 % 388 564 11
40 % 388 568 14
30 % 399 588 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures