Sequence Similarity Clusters for the Entities in PDB 5O14

Entity #1 | Chains: A,B
Factor H binding protein variant 1.1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5342
95 % 3 10 3710 Flexibility: Low
Max RMSD: 13.6, Avg RMSD: 1.1
PDBFlex
90 % 3 11 3293
70 % 7 20 1697
50 % 6 19 1759
40 % 6 19 1849
30 % 6 19 1843
Entity #2 | Chains: C,H
Fab 1A12 Heavy Chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34254
95 % 2 2 26945 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 2 28441
70 % 929 2943 1
50 % 987 3094 1
40 % 987 3094 1
30 % 1953 6183 1
Entity #3 | Chains: D,L
Fab 1A12 Light Chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34255
95 % 2 2 26946 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 243 784 2
70 % 747 2399 2
50 % 953 3045 2
40 % 953 3045 2
30 % 1954 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures