Sequence Similarity Clusters for the Entities in PDB 5NVZ

Entity #1 | Chains: A,D,G,J
Elongin-B protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 50 220
95 % 37 50 284 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.5
PDBFlex
90 % 37 50 302
70 % 37 50 338
50 % 37 50 399
40 % 37 50 426
30 % 37 50 445
Entity #2 | Chains: B,E,H,K
Elongin-C protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 70 177
95 % 51 71 228 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 51 71 241
70 % 51 71 274
50 % 51 71 323
40 % 51 71 341
30 % 52 75 349
Entity #3 | Chains: C,F,I,L
Von Hippel-Lindau disease tumor suppressor protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 55 209
95 % 42 55 266 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.5
PDBFlex
90 % 42 55 279
70 % 42 55 320
50 % 42 55 379
40 % 42 55 400
30 % 42 55 416

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures