Sequence Similarity Clusters for the Entities in PDB 5NVN

Entity #1 | Chains: A,C
Eukaryotic translation initiation factor 4E type 2 protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5657
95 % 4 7 6543 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.3
PDBFlex
90 % 4 7 6559
70 % 4 7 6463
50 % 4 7 6192
40 % 4 7 5998
30 % 36 68 449
Entity #2 | Chains: B,D
Eukaryotic translation initiation factor 4E-binding protein 1 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31010
95 % 2 2 26675 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 25776
70 % 2 2 23464
50 % 2 2 20615
40 % 2 2 18865
30 % 2 2 16929

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures