Sequence Similarity Clusters for the Entities in PDB 5NPI

Entity #1 | Chains: A,B
Single chain variable fragment of the non-neutralizing antibody DAO5 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23146
95 % 2 2 22984 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 23633
70 % 2 2 20415
50 % 712 3079 1
40 % 712 3079 1
30 % 1402 6153 1
Entity #2 | Chains: D,E
Epitope peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures