Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1260
95 % 23 40 1095 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 956
70 % 36 61 621
50 % 36 61 657
40 % 36 61 683
30 % 36 61 730
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44651
95 % 1 1 32177 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30874
70 % 1 1 27736
50 % 1 1 24343
40 % 1 1 22227
30 % 1 1 19839
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1377
95 % 24 41 1088 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1017
70 % 37 62 622
50 % 37 62 660
40 % 37 62 688
30 % 37 62 728
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1141
95 % 23 31 1542 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1076
70 % 36 60 606
50 % 44 70 555
40 % 44 70 588
30 % 44 70 613
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1244
95 % 22 36 1242 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1138
70 % 34 53 720
50 % 42 62 646
40 % 42 62 677
30 % 50 72 487
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4237
95 % 3 10 3592 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3653
70 % 3 10 3657
50 % 3 10 3599
40 % 3 10 3584
30 % 3 10 3498
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28244
95 % 22 39 1046 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1026
70 % 36 60 603
50 % 36 60 654
40 % 36 60 681
30 % 36 60 724
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1152
95 % 22 39 1053 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1045
70 % 24 46 924
50 % 36 60 667
40 % 36 60 692
30 % 36 60 735
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5716
95 % 3 8 5640 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5689
70 % 3 8 5615
50 % 3 8 5407
40 % 3 8 5271
30 % 3 8 5045
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 826
95 % 24 43 981 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1022
70 % 36 60 618
50 % 36 60 655
40 % 36 60 682
30 % 36 60 734

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 7 G, T Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
2 1PPJ 7 G, T Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
3 1PP9 7 G, T Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
4 2FYU 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 7.1.1.8 | Details
5 1NTM 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
6 1L0L 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
7 1NTK 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
8 1SQX 6 G Ubiquinol-cytochrome C reductase complex 14 kDa protein subunit 6 9913 7.1.1.8 | Details
9 5KLV 7 G Cytochrome b-c1 complex subunit 8 9913
10 1NTZ 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
11 1SQV 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
12 1SQB 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
13 1L0N 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
14 5OKD 7 G Cytochrome b-c1 complex subunit 8 9913
15 1SQP 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 7.1.1.8 | Details
16 6NHG 7 G Cytochrome b-c1 complex subunit 8 9913
17 1SQQ 7 G Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C subunit 7 9913 7.1.1.8 | Details
18 1NU1 7 G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C 9913 7.1.1.8 | Details
19 6HAW 7 G Cytochrome b-c1 complex subunit 8 9913
20 1BE3 7 G CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
21 4D6T 7 G, T CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913
22 1BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
23 5NMI 7 G, T Cytochrome b-c1 complex subunit 8 9913
24 4D6U 7 G, T CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913
25 1BGY 7 G, S CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
26 2BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
27 3BCC 7 G UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
28 6QC2 35 q1, q2 Ubiquinol-cytochrome c reductase complex III subunit VII 9940
29 6QC3 7 q1, q2 Ubiquinol-cytochrome c reductase complex III subunit VII 9940
30 6QC4 7 q1, q2 Ubiquinol-cytochrome c reductase complex III subunit VII 9940
31 6QBX 7 q1, q2 Ubiquinol-cytochrome c reductase complex III subunit VII 9940
32 6Q9E 7 q1, q2 Ubiquinol-cytochrome c reductase complex III subunit VII 9940
33 6FO6 7 G, T Cytochrome b-c1 complex subunit 8 9913
34 6FO0 7 G, T Cytochrome b-c1 complex subunit 8 9913
35 6FO2 7 G, T Cytochrome b-c1 complex subunit 8 9913
36 5LUF 7 g, s Cytochrome b-c1 complex subunit 8 9913
37 5GUP 50 Aa, z Cytochrome b-c1 complex subunit 8 9823
38 5GPN 7 G, S Cytochrome b-c1 complex subunit 8 9913
39 5J8K 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
40 5J7Y 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
41 5J4Z 57 AG, AR COMPLEX III SUBUNIT 8 / QP-C 9940
42 2YBB 15 G, g CYTOCHROME B-C1 COMPLEX SUBUNIT 8 9913 7.1.1.8 | Details