Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1287
95 % 23 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 955
70 % 36 61 622
50 % 36 61 664
40 % 36 61 695
30 % 36 61 729
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44493
95 % 1 1 32101 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30803
70 % 1 1 27682
50 % 1 1 24289
40 % 1 1 22140
30 % 1 1 19798
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1401
95 % 24 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1017
70 % 37 62 606
50 % 37 62 667
40 % 37 62 686
30 % 37 62 724
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1127
95 % 23 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1075
70 % 36 60 625
50 % 44 70 554
40 % 44 70 591
30 % 44 70 616
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1243
95 % 22 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1139
70 % 34 53 718
50 % 42 62 650
40 % 42 62 681
30 % 50 72 485
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4485
95 % 3 9 3830 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3510
70 % 3 10 3519
50 % 3 10 3470
40 % 3 10 3452
30 % 3 10 3391
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28846
95 % 22 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1034
70 % 36 60 620
50 % 36 60 653
40 % 36 60 688
30 % 36 60 725
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1165
95 % 22 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1039
70 % 24 46 925
50 % 36 60 662
40 % 36 60 689
30 % 36 60 726
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5696
95 % 3 8 5594 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5641
70 % 3 8 5568
50 % 3 8 5372
40 % 3 8 5230
30 % 3 8 5009
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 834
95 % 24 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1015
70 % 36 60 618
50 % 36 60 663
40 % 36 60 690
30 % 36 60 727

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 6 F, S Ubiquinol-cytochrome c reductase complex 14 kDa protein 9913 7.1.1.8 | Details
2 1PPJ 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
3 1PP9 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
4 2FYU 6 F Hypothetical protein LOC616871 subunit 6 9913
5 1NTM 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
6 1L0L 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
7 1NTK 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
8 1SQX 8 F Ubiquinol-cytochrome C reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
9 5KLV 6 F Cytochrome b-c1 complex subunit 7 9913
10 1NTZ 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
11 1SQV 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
12 1SQB 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
13 1L0N 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
14 5OKD 6 F Cytochrome b-c1 complex subunit 7 9913
15 1SQP 6 F sub6 subunit 6 9913
16 6NHG 6 F Cytochrome b-c1 complex subunit 7 9913
17 1SQQ 6 F Ubiquinol-cytochrome c reductase complex 14 kDa protein subunit 6 9913 7.1.1.8 | Details
18 1NU1 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
19 1BE3 6 F CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
20 4D6T 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
21 1QCR 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
22 5NMI 6 F, S Cytochrome b-c1 complex subunit 7 9913
23 4D6U 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
24 1BGY 6 F, R CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
25 6QC2 34 d1, d2 UQCRB 9940
26 6QC3 6 d1, d2 UQCRB 9940
27 6QC4 6 d1, d2 UQCRB 9940
28 6QBX 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
29 6Q9E 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
30 6FO6 6 F, S Cytochrome b-c1 complex subunit 7 9913
31 6FO0 6 F, S Cytochrome b-c1 complex subunit 7 9913
32 6FO2 6 F, S Cytochrome b-c1 complex subunit 7 9913
33 5LUF 6 f, r Cytochrome b-c1 complex subunit 7 9913
34 5GUP 49 9, y Cytochrome b-c1 complex subunit 7 9823
35 5GPN 6 F, R Cytochrome b-c1 complex subunit 7 9913
36 5J8K 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
37 5J7Y 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
38 5J4Z 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
39 2YBB 14 F, f CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913 7.1.1.8 | Details