Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1259
95 % 23 40 1088 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 956
70 % 36 61 624
50 % 36 61 663
40 % 36 61 691
30 % 36 61 734
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38336
95 % 1 1 32123 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30863
70 % 1 1 27758
50 % 1 1 24316
40 % 1 1 22177
30 % 1 1 19831
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1392
95 % 24 41 1089 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1011
70 % 37 62 625
50 % 37 62 661
40 % 37 62 689
30 % 37 62 732
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1106
95 % 23 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1064
70 % 36 60 622
50 % 44 70 555
40 % 44 70 594
30 % 44 70 619
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1285
95 % 22 36 1244 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1140
70 % 34 53 726
50 % 42 62 651
40 % 42 62 678
30 % 50 72 489
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4190
95 % 3 10 3554 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3606
70 % 3 10 3503
50 % 3 10 3562
40 % 3 10 3545
30 % 3 10 3406
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28248
95 % 22 39 1047 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1043
70 % 36 60 614
50 % 36 60 658
40 % 36 60 686
30 % 36 60 730
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1149
95 % 22 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1044
70 % 24 46 929
50 % 36 60 664
40 % 36 60 692
30 % 36 60 735
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5702
95 % 3 8 5625 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5676
70 % 3 8 5604
50 % 3 8 5402
40 % 3 8 5258
30 % 3 8 5025
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 829
95 % 24 43 978 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1021
70 % 36 60 606
50 % 36 60 653
40 % 36 60 680
30 % 36 60 724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 6 F, S Ubiquinol-cytochrome c reductase complex 14 kDa protein 9913 7.1.1.8 | Details
2 1PPJ 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
3 1PP9 6 F, S Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
4 2FYU 6 F Hypothetical protein LOC616871 subunit 6 9913
5 1NTM 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
6 1L0L 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
7 1NTK 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
8 1SQX 8 F Ubiquinol-cytochrome C reductase complex 11 kDa protein subunit 8 9913 7.1.1.8 | Details
9 5KLV 6 F Cytochrome b-c1 complex subunit 7 9913
10 1NTZ 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
11 1SQV 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
12 1SQB 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
13 1L0N 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913
14 5OKD 6 F Cytochrome b-c1 complex subunit 7 9913
15 3TGU 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
16 3L75 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
17 1SQP 6 F sub6 subunit 6 9913
18 6NHG 6 F Cytochrome b-c1 complex subunit 7 9913
19 3L71 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
20 3L74 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
21 1SQQ 6 F Ubiquinol-cytochrome c reductase complex 14 kDa protein subunit 6 9913 7.1.1.8 | Details
22 3L70 6 F, S Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein 9031 7.1.1.8 | Details
23 1NU1 6 F Ubiquinol-cytochrome C reductase complex 14 kDa protein 9913 7.1.1.8 | Details
24 3H1J 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
25 6HAW 6 F Cytochrome b-c1 complex subunit 7 9913
26 1BE3 6 F CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
27 4U3F 6 F, S Cytochrome b-c1 complex subunit 7 9031
28 4D6T 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
29 1QCR 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
30 3L73 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
31 3H1H 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 7.1.1.8 | Details
32 3L72 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
33 3H1K 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
34 1BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
35 3H1L 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031 7.1.1.8 | Details
36 5NMI 6 F, S Cytochrome b-c1 complex subunit 7 9913
37 3H1I 6 F, S UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN 9031 7.1.1.8 | Details
38 4D6U 6 F, S CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913
39 1BGY 6 F, R CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
40 2BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
41 3CWB 6 F, S MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN 9031
42 3BCC 6 F UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
43 6QC2 34 d1, d2 UQCRB 9940
44 6QC3 6 d1, d2 UQCRB 9940
45 6QC4 6 d1, d2 UQCRB 9940
46 6QBX 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
47 6Q9E 6 d1, d2 Cytochrome b-c1 complex subunit 7 9940
48 6FO6 6 F, S Cytochrome b-c1 complex subunit 7 9913
49 6FO0 6 F, S Cytochrome b-c1 complex subunit 7 9913
50 6FO2 6 F, S Cytochrome b-c1 complex subunit 7 9913
51 5XTE 6 F, S Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
52 5XTH 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
53 5XTI 63 AF, AS Cytochrome b-c1 complex subunit 7 UNP RESIDUES 6-111 9606
54 5LUF 6 f, r Cytochrome b-c1 complex subunit 7 9913
55 5GUP 49 9, y Cytochrome b-c1 complex subunit 7 9823
56 5GPN 6 F, R Cytochrome b-c1 complex subunit 7 9913
57 5J8K 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
58 5J7Y 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
59 5J4Z 56 AF, AQ COMPLEX III SUBUNIT 7 / 14KDA 9940
60 2YBB 14 F, f CYTOCHROME B-C1 COMPLEX SUBUNIT 7 9913 7.1.1.8 | Details