Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1260
95 % 23 40 1095 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 956
70 % 36 61 621
50 % 36 61 657
40 % 36 61 683
30 % 36 61 730
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44651
95 % 1 1 32177 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30874
70 % 1 1 27736
50 % 1 1 24343
40 % 1 1 22227
30 % 1 1 19839
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1377
95 % 24 41 1088 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1017
70 % 37 62 622
50 % 37 62 660
40 % 37 62 688
30 % 37 62 728
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1141
95 % 23 31 1542 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1076
70 % 36 60 606
50 % 44 70 555
40 % 44 70 588
30 % 44 70 613
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1244
95 % 22 36 1242 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1138
70 % 34 53 720
50 % 42 62 646
40 % 42 62 677
30 % 50 72 487
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4237
95 % 3 10 3592 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3653
70 % 3 10 3657
50 % 3 10 3599
40 % 3 10 3584
30 % 3 10 3498
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28244
95 % 22 39 1046 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1026
70 % 36 60 603
50 % 36 60 654
40 % 36 60 681
30 % 36 60 724
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1152
95 % 22 39 1053 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1045
70 % 24 46 924
50 % 36 60 667
40 % 36 60 692
30 % 36 60 735
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5716
95 % 3 8 5640 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5689
70 % 3 8 5615
50 % 3 8 5407
40 % 3 8 5271
30 % 3 8 5045
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 826
95 % 24 43 981 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1022
70 % 36 60 618
50 % 36 60 655
40 % 36 60 682
30 % 36 60 734

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4D6T 11 V CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details
2 4D6T 5 E, I, R CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details
3 5NMI 5 E, I, R, V Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
4 4D6U 12 V CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details
5 4D6U 5 E, I, R CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 9913 7.1.1.8 | Details
6 6FO6 1 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
7 6FO0 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
8 6FO2 5 E, R Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details
9 5GUP 53 2, 4 Cytochrome b-c1 complex subunit Rieske, mitochondrial 9823
10 5GPN 5 E, Q Cytochrome b-c1 complex subunit Rieske, mitochondrial 9913 7.1.1.8 | Details