Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1259
95 % 23 40 1088 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 956
70 % 36 61 624
50 % 36 61 663
40 % 36 61 691
30 % 36 61 734
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38336
95 % 1 1 32123 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30863
70 % 1 1 27758
50 % 1 1 24316
40 % 1 1 22177
30 % 1 1 19831
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1392
95 % 24 41 1089 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1011
70 % 37 62 625
50 % 37 62 661
40 % 37 62 689
30 % 37 62 732
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1106
95 % 23 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1064
70 % 36 60 622
50 % 44 70 555
40 % 44 70 594
30 % 44 70 619
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1285
95 % 22 36 1244 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1140
70 % 34 53 726
50 % 42 62 651
40 % 42 62 678
30 % 50 72 489
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4190
95 % 3 10 3554 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3606
70 % 3 10 3503
50 % 3 10 3562
40 % 3 10 3545
30 % 3 10 3406
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28248
95 % 22 39 1047 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1043
70 % 36 60 614
50 % 36 60 658
40 % 36 60 686
30 % 36 60 730
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1149
95 % 22 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1044
70 % 24 46 929
50 % 36 60 664
40 % 36 60 692
30 % 36 60 735
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5702
95 % 3 8 5625 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5676
70 % 3 8 5604
50 % 3 8 5402
40 % 3 8 5258
30 % 3 8 5025
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 829
95 % 24 43 978 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1021
70 % 36 60 606
50 % 36 60 653
40 % 36 60 680
30 % 36 60 724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3CX5 4 D, O Cytochrome c1, heme protein, mitochondrial 559292 7.1.1.8 | Details
2 2A06 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
3 1PPJ 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
4 1PP9 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
5 1KB9 4 D CYTOCHROME C1, HEME PROTEIN RESIDUES 62-307 4932
6 2IBZ 4 D Cytochrome c1, heme protein, mitochondrial precursor 4932 7.1.1.8 | Details
7 2FYU 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
8 1EZV 4 D CYTOCHROME C1 RESIDUES 62-306 4932
9 1NTM 4 D cytochrome c1 9913
10 3CXH 4 D, O Cytochrome c1, heme protein, mitochondrial 559292 7.1.1.8 | Details
11 1P84 4 D Cytochrome c1, heme protein 4932 7.1.1.8 | Details
12 1L0L 4 D Cytochrome c1, heme protein 9913
13 1NTK 4 D cytochrome c1 9913
14 1SQX 5 D Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)] iron sulfur protein 9913
15 5KLV 4 D Cytochrome c1, heme protein, mitochondrial 9913
16 1NTZ 4 D cytochrome c1 9913
17 1SQV 4 D Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
18 1SQB 4 D Cytochrome c1, heme protein, mitochondrial 9913 7.1.1.8 | Details
19 1L0N 4 D Cytochrome c1, heme protein 9913
20 3TGU 4 D, Q Mitochondrial cytochrome c1, heme protein 9031 7.1.1.8 | Details
21 3L75 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
22 1KYO 4 D, O CYTOCHROME C1, HEME PROTEIN RESIDUES 62-309 4932
23 1SQP 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
24 6NHG 4 D Cytochrome c1, heme protein, mitochondrial 9913
25 3L71 4 D, Q Mitochondrial cytochrome c1, heme protein 9031 7.1.1.8 | Details
26 3L74 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
27 1SQQ 4 D Cytochrome c1, heme protein, mitochondrial cytochrome c1 9913
28 3L70 4 D, Q Mitochondrial cytochrome c1, heme protein 9031 7.1.1.8 | Details
29 1NU1 4 D cytochrome c1 9913
30 3H1J 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
31 6HAW 4 D Cytochrome c1, heme protein, mitochondrial 9913
32 1BE3 4 D CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
33 4U3F 4 D, Q Mitochondrial cytochrome c1, heme protein 9031 7.1.1.8 | Details
34 4D6T 4 D, Q CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL 9913
35 3L73 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
36 3H1H 4 D, Q CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL 9031 7.1.1.8 | Details
37 3L72 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
38 4PD4 4 D Cytochrome c1, heme protein, mitochondrial UNP residues 62-309 4932
39 3H1K 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
40 1BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
41 3H1L 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031 7.1.1.8 | Details
42 5NMI 4 D, Q Cytochrome c1, heme protein, mitochondrial 9913
43 3H1I 4 D, Q CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL 9031 7.1.1.8 | Details
44 1BGY 4 D, P CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
45 2BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
46 3CWB 4 D, Q MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN 9031
47 3BCC 4 D UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
48 6QC2 32 c1, c2 Cytochrome c1 9940
49 6QC3 4 c1, c2 Cytochrome c1 9940
50 6QC4 4 c1, c2 Cytochrome c1 9940
51 6QBX 4 c1, c2 Cytochrome c1 9940
52 6Q9E 4 c1, c2 Cytochrome c1 9940
53 6HU9 4 D, O Cytochrome c1, heme protein, mitochondrial 4932
54 5XTE 8 H, U Cytochrome c1, heme protein, mitochondrial 9606
55 5XTH 65 AH, AU Cytochrome c1, heme protein, mitochondrial 9606
56 5XTI 65 AH, AU Cytochrome c1, heme protein, mitochondrial 9606
57 5LUF 4 d, p Cytochrome c1, heme protein, mitochondrial 9913
58 5GPN 4 D, P Cytochrome c1, heme protein, mitochondrial 9913
59 5J8K 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
60 5J7Y 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
61 5J4Z 54 AD, AO COMPLEX III SUBUNIT 4 / CYTOCHROME C1 9940
62 2YBB 12 D, d CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL RESIDUES 85-325 9913 7.1.1.8 | Details