Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1287
95 % 23 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 955
70 % 36 61 622
50 % 36 61 664
40 % 36 61 695
30 % 36 61 729
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44493
95 % 1 1 32101 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30803
70 % 1 1 27682
50 % 1 1 24289
40 % 1 1 22140
30 % 1 1 19798
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1401
95 % 24 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1017
70 % 37 62 606
50 % 37 62 667
40 % 37 62 686
30 % 37 62 724
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1127
95 % 23 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1075
70 % 36 60 625
50 % 44 70 554
40 % 44 70 591
30 % 44 70 616
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1243
95 % 22 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1139
70 % 34 53 718
50 % 42 62 650
40 % 42 62 681
30 % 50 72 485
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4485
95 % 3 9 3830 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3510
70 % 3 10 3519
50 % 3 10 3470
40 % 3 10 3452
30 % 3 10 3391
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28846
95 % 22 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1034
70 % 36 60 620
50 % 36 60 653
40 % 36 60 688
30 % 36 60 725
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1165
95 % 22 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1039
70 % 24 46 925
50 % 36 60 662
40 % 36 60 689
30 % 36 60 726
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5696
95 % 3 8 5594 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5641
70 % 3 8 5568
50 % 3 8 5372
40 % 3 8 5230
30 % 3 8 5009
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 834
95 % 24 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1015
70 % 36 60 618
50 % 36 60 663
40 % 36 60 690
30 % 36 60 727

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2A06 3 C, P Cytochrome b, heme protein, mitochondrial 9913 7.1.1.8 | Details
2 1PPJ 3 C, P Cytochrome b 9913 7.1.1.8 | Details
3 1PP9 3 C, P Cytochrome b 9913 7.1.1.8 | Details
4 2FYU 3 C Cytochrome b cytochrome b 9913
5 1NTM 3 C Cytochrome b 9913
6 1L0L 3 C Cytochrome B 9913
7 1NTK 3 C Cytochrome b 9913
8 1SQX 3 C Cytochrome b cytochrome b 9913
9 5KLV 3 C Cytochrome b 9913
10 1NTZ 3 C Cytochrome b 9913
11 1SQV 3 C Cytochrome b 9913 7.1.1.8 | Details
12 1SQB 3 C Cytochrome b 9913 7.1.1.8 | Details
13 1L0N 3 C Cytochrome B 9913
14 5OKD 3 C Cytochrome b 9913
15 3TGU 3 C, P Cytochrome b 9031
16 3L75 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
17 1SQP 3 C Cytochrome b cytochrome b 9913
18 6NHG 3 C Cytochrome b 9913
19 3L71 3 C, P Cytochrome b 9031 7.1.1.8 | Details
20 3L74 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
21 1SQQ 3 C Cytochrome b cytochrome b 9913
22 3L70 3 C, P Cytochrome b 9031 7.1.1.8 | Details
23 1NU1 3 C Cytochrome b 9913
24 3H1J 3 C, P Cytochrome b 9031 7.1.1.8 | Details
25 6HAW 3 C Cytochrome b 9913
26 1BE3 3 C CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
27 4U3F 3 C, P Cytochrome b 9031
28 4D6T 3 C, P CYTOCHROME B 9913
29 1QCR 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE 9913 7.1.1.8 | Details
30 3L73 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
31 3H1H 3 C, P Cytochrome b 9031 7.1.1.8 | Details
32 3L72 3 C, P CYTOCHROME B 9031 7.1.1.8 | Details
33 3H1K 3 C, P Cytochrome b 9031 7.1.1.8 | Details
34 1BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS 9031 7.1.1.8 | Details
35 3H1L 3 C, P Cytochrome b 9031 7.1.1.8 | Details
36 5NMI 3 C, P Cytochrome b 9913
37 3H1I 3 C, P Cytochrome b 9031 7.1.1.8 | Details
38 4D6U 3 C, P CYTOCHROME B 9913
39 1BGY 3 C, O CYTOCHROME BC1 COMPLEX 9913 7.1.1.8 | Details
40 2BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN 9031 7.1.1.8 | Details
41 3CWB 3 C, P Cytochrome b 9031
42 3BCC 3 C UBIQUINOL CYTOCHROME C OXIDOREDUCTASE MODEL INCLUDE QO-SITE INHIBITOR STIGMATELLIN AND QI-SITE INHIBITOR ANTIMYCIN 9031 7.1.1.8 | Details
43 6QC2 31 b1, b2 Cytochrome b 9940
44 6QC3 3 b1, b2 Cytochrome b 9940
45 6QC4 3 b1, b2 Cytochrome b 9940
46 6QBX 3 b1, b2 Cytochrome b 9940
47 6Q9E 3 b1, b2 Cytochrome b 9940
48 6FO6 4 C, P Cytochrome b 9913
49 6FO0 3 C, P Cytochrome b 9913
50 6FO2 3 C, P Cytochrome b 9913
51 5XTE 9 J, V Cytochrome b 9606
52 5XTH 66 AJ, AV Cytochrome b UNP RESIDUES 1-379 9606
53 5XTI 66 AJ, AV Cytochrome b UNP RESIDUES 2-479 9606
54 5LUF 3 b, o Cytochrome b 9913
55 5GUP 47 7, w Cytochrome b 9823
56 5GPN 3 C, O Cytochrome b 9913
57 5J8K 53 AC, AN Cytochrome b 9940
58 5J7Y 53 AC, AN Cytochrome b 9940
59 5J4Z 53 AC, AN Cytochrome b 9940
60 2YBB 11 C, c CYTOCHROME B 9913 7.1.1.8 | Details