Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1287
95 % 23 40 1084 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 955
70 % 36 61 622
50 % 36 61 664
40 % 36 61 695
30 % 36 61 729
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44493
95 % 1 1 32101 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30803
70 % 1 1 27682
50 % 1 1 24289
40 % 1 1 22140
30 % 1 1 19798
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1401
95 % 24 41 1085 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1017
70 % 37 62 606
50 % 37 62 667
40 % 37 62 686
30 % 37 62 724
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1127
95 % 23 31 1537 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1075
70 % 36 60 625
50 % 44 70 554
40 % 44 70 591
30 % 44 70 616
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1243
95 % 22 36 1245 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1139
70 % 34 53 718
50 % 42 62 650
40 % 42 62 681
30 % 50 72 485
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4485
95 % 3 9 3830 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3510
70 % 3 10 3519
50 % 3 10 3470
40 % 3 10 3452
30 % 3 10 3391
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28846
95 % 22 39 1044 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1034
70 % 36 60 620
50 % 36 60 653
40 % 36 60 688
30 % 36 60 725
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1165
95 % 22 39 1049 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1039
70 % 24 46 925
50 % 36 60 662
40 % 36 60 689
30 % 36 60 726
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5696
95 % 3 8 5594 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5641
70 % 3 8 5568
50 % 3 8 5372
40 % 3 8 5230
30 % 3 8 5009
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 834
95 % 24 43 973 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1015
70 % 36 60 618
50 % 36 60 663
40 % 36 60 690
30 % 36 60 727

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NMI 10 K, X ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR 9913