Sequence Similarity Clusters for the Entities in PDB 5NMI

Entity #1 | Chains: A,N
Cytochrome b-c1 complex subunit 1, mitochondrial protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1278
95 % 23 40 1081 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 23 44 951
70 % 36 61 617
50 % 36 61 651
40 % 36 61 679
30 % 36 61 716
Entity #10 | Chains: K,X
ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44224
95 % 1 1 31889 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30591
70 % 1 1 27557
50 % 1 1 24159
40 % 1 1 22049
30 % 1 1 19708
Entity #2 | Chains: B,O
Cytochrome b-c1 complex subunit 2, mitochondrial protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 28 1370
95 % 24 41 1063 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 25 45 1006
70 % 37 62 604
50 % 37 62 659
40 % 37 62 686
30 % 37 62 724
Entity #3 | Chains: C,P
Cytochrome b protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 31 1123
95 % 23 31 1509 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 23 40 1059
70 % 36 60 619
50 % 44 70 548
40 % 44 70 592
30 % 44 70 616
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1281
95 % 22 36 1236 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 22 39 1133
70 % 34 53 713
50 % 42 62 645
40 % 42 62 674
30 % 50 72 485
Entity #5 | Chains: E,I,R,V
Cytochrome b-c1 complex subunit Rieske, mitochondrial protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 4444
95 % 3 9 3814 Flexibility: No
Max RMSD: 3.4, Avg RMSD: 0.4
PDBFlex
90 % 3 10 3504
70 % 3 10 3506
50 % 3 10 3452
40 % 3 10 3447
30 % 3 10 3366
Entity #6 | Chains: F,S
Cytochrome b-c1 complex subunit 7 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28701
95 % 22 39 1034 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 42 1016
70 % 36 60 602
50 % 36 60 650
40 % 36 60 678
30 % 36 60 715
Entity #7 | Chains: G,T
Cytochrome b-c1 complex subunit 8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 30 1147
95 % 22 39 1044 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 42 1037
70 % 24 46 921
50 % 36 60 660
40 % 36 60 687
30 % 36 60 725
Entity #8 | Chains: H,U
Cytochrome b-c1 complex subunit 6, mitochondrial protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 5491
95 % 3 8 5558 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 8 5614
70 % 3 8 5548
50 % 3 8 5336
40 % 3 8 5196
30 % 3 8 4962
Entity #9 | Chains: J,W
Cytochrome b-c1 complex subunit 9 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 38 821
95 % 24 43 969 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.0
PDBFlex
90 % 24 43 1010
70 % 36 60 613
50 % 36 60 657
40 % 36 60 683
30 % 36 60 722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures