Sequence Similarity Clusters for the Entities in PDB 5NMF

Entity #1 | Chains: A,F
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 183 221 68
95 % 232 276 69 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 282 336 40
70 % 684 822 6
50 % 686 827 8
40 % 726 871 9
30 % 733 895 12
Entity #2 | Chains: B,G
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 591 708 2
95 % 631 757 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 644 773 3
70 % 864 1076 4
50 % 879 1100 4
40 % 879 1100 4
30 % 879 1100 7
Entity #3 | Chains: C,H
Gag protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
HUman T-cell receptor Alpha chain protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9879
95 % 3 5 10287 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 19 33 1584
70 % 51 96 360
50 % 246 394 78
40 % 246 394 93
30 % 246 394 93
Entity #5 | Chains: E,J
Human T-cell receptor Beta chain protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10167
95 % 4 5 9253 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 6 8238
70 % 240 377 43
50 % 252 403 66
40 % 252 403 84
30 % 252 403 88
Entity #6 | Chains: I
HUman T-cell receptor Alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 9879
95 % 4 5 10287 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 20 33 1584
70 % 52 96 360
50 % 247 394 78
40 % 247 394 93
30 % 247 394 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures