5NM9

Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site.


Sequence Similarity Clusters for the Entities in PDB 5NM9

Entity #1 | Chains: A,B
Mothers against decapentaplegic homolog protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47769
95 % 1 1 43174
90 % 1 1 38057
70 % 2 5 7871
50 % 2 5 7707
40 % 2 5 7406
30 % 2 5 6688
Entity #2 | Chains: C,D
DNA (5'-D(P*AP*TP*GP*CP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*GP*CP*AP*T)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures