Sequence Similarity Clusters for the Entities in PDB 5NKQ

Entity #1 | Chains: A,B,C,D
Putative fluoride ion transporter CrcB protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7260
95 % 1 3 7895 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 3 7941
70 % 1 3 7705
50 % 1 3 7625
40 % 1 3 7344
30 % 1 10 2913
Entity #2 | Chains: E,F,G,H
Monobody protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23194
95 % 1 1 17881 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 12577
70 % 16 55 698
50 % 16 51 807
40 % 16 51 846
30 % 16 51 885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures