Sequence Similarity Clusters for the Entities in PDB 5NIV

Entity #1 | Chains: A
Light chain of 5D3 Fab protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7125
95 % 1 6 7862
90 % 1 15 3374
70 % 43 2416 2
50 % 53 3067 2
40 % 53 3067 2
30 % 115 6228 1
Entity #2 | Chains: B
Heavy chain of 5D3 Fab protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7156
95 % 1 6 7953
90 % 1 6 7914
70 % 53 2965 1
50 % 60 3117 1
40 % 60 3117 1
30 % 116 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NIV 2 B Heavy chain of 5D3 Fab 10090
2 6HCO 3 D, F 5D3-Fab heavy chain 10090
3 6FEQ 3 D, F 5D3(Fab) heavy chain variable domain The variable domain of the heavy chain of 5D3(Fab) 10090
4 6ETI 3 D, F 5D3(Fab) heavy chain variable domain The variable domain of the heavy chain of 5D3(Fab) 10090
5 5NJ3 2 C, E 5D3-Fab heavy chain 10090
6 5NJG 2 C, E 5D3-Fab heavy chain 10090