Sequence Similarity Clusters for the Entities in PDB 5NIV

Entity #1 | Chains: A
Light chain of 5D3 Fab protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7155
95 % 1 6 7893
90 % 1 15 3379
70 % 43 2418 2
50 % 53 3071 2
40 % 53 3071 2
30 % 115 6236 1
Entity #2 | Chains: B
Heavy chain of 5D3 Fab protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7261
95 % 1 6 7845
90 % 1 6 7922
70 % 53 2969 1
50 % 60 3121 1
40 % 60 3121 1
30 % 116 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NIV 1 A Light chain of 5D3 Fab 10090
2 6HCO 2 C, E 5D3-Fab light chain 10090
3 6FEQ 2 C, E 5D3(Fab) light chain variable domain The variable domain of the light chain of 5D3(Fab) 10090
4 6ETI 2 C, E 5D3(Fab) light chain variable domain The variable domain of the light chain of 5D3(Fab) 10090
5 5NJ3 3 D, F 5D3-Fab light chain 10090
6 5NJG 3 D, F 5D3-Fab light chain 10090