Sequence Similarity Clusters for the Entities in PDB 5NIV

Entity #1 | Chains: A
Light chain of 5D3 Fab protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7125
95 % 1 6 7862
90 % 1 15 3374
70 % 43 2416 2
50 % 53 3067 2
40 % 53 3067 2
30 % 115 6228 1
Entity #2 | Chains: B
Heavy chain of 5D3 Fab protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 7156
95 % 1 6 7953
90 % 1 6 7914
70 % 53 2965 1
50 % 60 3117 1
40 % 60 3117 1
30 % 116 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NIV 1 A Light chain of 5D3 Fab 10090
2 3CVI 2 L 25-D1.16 Light chain 10090
3 1OSP 1 L FAB 184.1 10090
4 2BDN 2 L Antibody light chain 11K2 fab fragment 10090
5 3CVH 5 L, R 25-D1.16 light chain 10090
6 3RAJ 3 L light chain of the Fab fragment of antibody HB7 10090
7 3UBX 3 I, L L363 light chain (IGKV13-84*01) Fab 10090
8 1JRH 1 L ANTIBODY A6 FAB FRAGMENT;PEPSIN DIGESTION OF INTACT ANTIBODY 10090
9 6GFF 4 K, M MHG-8 Fab light chain Mature protein expected to start at Aspartic acid21. 10090
10 6HCO 2 C, E 5D3-Fab light chain 10090
11 6FEQ 2 C, E 5D3(Fab) light chain variable domain The variable domain of the light chain of 5D3(Fab) 10090
12 6ETI 2 C, E 5D3(Fab) light chain variable domain The variable domain of the light chain of 5D3(Fab) 10090
13 5NJ3 3 D, F 5D3-Fab light chain 10090
14 5NJG 3 D, F 5D3-Fab light chain 10090
15 3J1S 1 L A20 light chain Fab' 10090