Sequence Similarity Clusters for the Entities in PDB 5NEK

Entity #1 | Chains: A,B,C,D
Peptidoglycan N-acetylglucosamine deacetylase protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 3147
95 % 4 5 3823 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 5 3885
70 % 4 5 3873
50 % 4 5 3802
40 % 4 5 3733
30 % 4 5 3655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures