Sequence Similarity Clusters for the Entities in PDB 5NDT

Entity #1 | Chains: A
Serine/threonine-protein kinase pim-1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 34 1418
95 % 13 66 845 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 13 67 868
70 % 22 149 327
50 % 22 151 378
40 % 22 151 398
30 % 22 151 412
Entity #2 | Chains: B
Pimtide protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures