Sequence Similarity Clusters for the Entities in PDB 5NDC

Entity #1 | Chains: A
Cytochrome c oxidase subunit 1 protein, length: 569 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 4759
95 % 4 36 1808 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 4 36 1858
70 % 4 36 1926
50 % 4 36 1951
40 % 4 36 2000
30 % 4 36 2028
Entity #2 | Chains: B
Cytochrome c oxidase subunit 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 29 1907
95 % 4 36 1898 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 36 1942
70 % 4 36 1987
50 % 4 36 2038
40 % 4 36 2094
30 % 4 36 2113
Entity #3 | Chains: C
Cytochrome c oxidase polypeptide IIA protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 36 1400
95 % 4 36 1883 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.3
PDBFlex
90 % 4 36 1925
70 % 4 36 1968
50 % 4 36 2020
40 % 4 36 2075
30 % 4 36 2094

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures