5N7B

Understanding the singular conformational landscape of the Tn antigens: Sulfur-for- oxygen substitution in the glycosidic linkage provides new insights into molecular recognition by an antibody


Sequence Similarity Clusters for the Entities in PDB 5N7B

Entity #1 | Chains: H
Ig heavy chain V-III region J606,Ig lambda-1 chain V region S43 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 16031
95 % 5 10 8326 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 5 10 8085
70 % 5 10 8039
50 % 194 3121 1
40 % 194 3121 1
30 % 380 6236 1
Entity #2 | Chains: I
APD(CG6)RP(NH2) peptide protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures