Sequence Similarity Clusters for the Entities in PDB 5MYX

Entity #1 | Chains: A,C
Fab c#24 light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49896
95 % 6 34 1347 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.0
PDBFlex
90 % 6 55 734
70 % 35 2290 2
50 % 45 2908 2
40 % 45 2908 2
30 % 98 5899 1
Entity #2 | Chains: B,D
Fab c#24 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49895
95 % 1 1 38084 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 35517
70 % 45 2805 1
50 % 51 2949 1
40 % 51 2949 1
30 % 99 5899 1
Entity #3 | Chains: E,F
Pyroglutamate-Abeta pE3-18 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures