Sequence Similarity Clusters for the Entities in PDB 5MY6

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 15 4074
95 % 1 16 4613 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.5
PDBFlex
90 % 1 16 4621
70 % 1 14 5504
50 % 1 14 5401
40 % 2 38 1408
30 % 2 38 1422
Entity #2 | Chains: B
Nanobody 2Rs15d protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 86044
95 % 1 1 57912
90 % 1 1 54685
70 % 232 586 8
50 % 321 856 4
40 % 324 880 5
30 % 469 1301 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures