5MTK

Crystal structure of human Caspase-1 with (3S,6S,10aS)-N-((2S,3S)-2-hydroxy-5-oxotetrahydrofuran-3-yl)-6-(isoquinoline-1-carboxamido)-5-oxodecahydropyrrolo[1,2-a]azocine-3-carboxamide (PGE-3935199)


Sequence Similarity Clusters for the Entities in PDB 5MTK

Entity #1 | Chains: A
Caspase-1 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 22 2581
95 % 31 32 2068 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 31 32 2124
70 % 31 32 2189
50 % 31 32 2155
40 % 31 32 2189
30 % 31 32 2200
Entity #2 | Chains: B
Caspase-1 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 2455
95 % 31 32 2077 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.8
PDBFlex
90 % 31 32 2134
70 % 31 32 2201
50 % 31 32 2224
40 % 31 32 2221
30 % 31 32 2242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures