Sequence Similarity Clusters for the Entities in PDB 5MMJ

Entity #1 | Chains: 0
50S ribosomal protein L31 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 31219
95 % 3 3 26585
90 % 3 3 25703
70 % 3 3 23405
50 % 3 4 15913
40 % 3 4 14772
30 % 3 4 13427
Entity #10 | Chains: h
30S ribosomal protein S8, chloroplastic protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 16041
95 % 5 6 17042
90 % 5 6 16743
70 % 5 6 15656
50 % 5 6 14133
40 % 456 560 29
30 % 589 763 22
Entity #11 | Chains: i
plastid ribosomal protein uS9c protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32879
95 % 2 3 29080
90 % 2 3 27965
70 % 2 3 25313
50 % 2 3 22189
40 % 2 3 20301
30 % 2 3 18186
Entity #12 | Chains: j
plastid ribosomal protein uS10c protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43885
95 % 2 2 35315
90 % 2 2 36945
70 % 2 3 25312
50 % 2 3 22188
40 % 2 3 20300
30 % 2 3 18185
Entity #13 | Chains: k
30S ribosomal protein S11, chloroplastic protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23477
95 % 4 5 18184
90 % 4 5 17867
70 % 4 5 16662
50 % 4 4 18257
40 % 4 4 16784
30 % 5 6 10765
Entity #14 | Chains: l
30S ribosomal protein S12, chloroplastic protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 17665
95 % 5 6 16246
90 % 5 6 15992
70 % 437 547 17
50 % 451 565 22
40 % 451 565 28
30 % 451 565 33
Entity #15 | Chains: m
plastid ribosomal protein uS13c protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 52541
95 % 2 2 34252
90 % 2 2 36944
70 % 2 2 35092
50 % 2 2 28543
40 % 2 2 25949
30 % 2 2 23062
Entity #16 | Chains: n
30S ribosomal protein S14, chloroplastic protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 18863
95 % 5 6 15587
90 % 5 6 15357
70 % 5 6 14435
50 % 5 6 13082
40 % 120 193 251
30 % 121 194 264
Entity #17 | Chains: o
30S ribosomal protein S15, chloroplastic protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 18357
95 % 4 5 18252
90 % 4 5 17927
70 % 4 5 16314
50 % 4 5 14690
40 % 4 5 13953
30 % 4 5 12428
Entity #18 | Chains: p
30S ribosomal protein S16, chloroplastic protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 15049
95 % 5 6 15588
90 % 5 6 15358
70 % 5 6 14436
50 % 5 6 13083
40 % 5 6 12207
30 % 5 6 11187
Entity #19 | Chains: q
plastid ribosomal protein uS17c protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53099
95 % 2 2 36003
90 % 2 2 34431
70 % 2 2 30713
50 % 2 2 26825
40 % 2 2 24408
30 % 2 2 21752
Entity #2 | Chains: 8
plastid ribosomal protein bS1c protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: r
30S ribosomal protein S18, chloroplastic protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 27636
95 % 4 5 17784
90 % 4 5 17473
70 % 4 5 16316
50 % 4 5 14691
40 % 4 5 13650
30 % 4 5 12429
Entity #21 | Chains: s
30S ribosomal protein S19 alpha, chloroplastic protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 19864
95 % 4 5 17343
90 % 4 5 17472
70 % 4 5 16315
50 % 449 550 25
40 % 449 550 33
30 % 449 550 37
Entity #22 | Chains: t
plastid ribosomal protein bS20c protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 60328
95 % 2 2 44814
90 % 2 2 30379
70 % 2 2 37528
50 % 2 2 29640
40 % 2 2 29394
30 % 2 2 26001
Entity #23 | Chains: u
plastid ribosomal protein bS21c protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53101
95 % 2 2 36006
90 % 2 2 34432
70 % 2 2 30714
50 % 2 3 21553
40 % 2 3 19711
30 % 2 3 17656
Entity #24 | Chains: v
30S ribosomal protein 2, chloroplastic protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53098
95 % 2 2 36002
90 % 2 2 37770
70 % 2 2 30711
50 % 2 2 26823
40 % 2 2 24407
30 % 2 2 23240
Entity #25 | Chains: w
30S ribosomal protein 3, chloroplastic protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56626
95 % 2 2 40348
90 % 2 2 42609
70 % 2 2 34363
50 % 2 2 32463
40 % 2 2 26881
30 % 2 2 25999
Entity #26 | Chains: x
30S ribosomal protein S31, chloroplastic protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40439
95 % 2 2 34495
90 % 2 2 33013
70 % 2 2 29525
50 % 2 2 25843
40 % 2 2 23521
30 % 2 2 21008
Entity #27 | Chains: y
Ribosome-binding factor PSRP1, chloroplastic protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56625
95 % 2 2 40347
90 % 2 2 38500
70 % 2 2 34114
50 % 2 2 29639
40 % 2 2 26880
30 % 2 2 23857
Entity #3 | Chains: a
16S ribosomal RNA rna, length: 1491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: b
30S ribosomal protein S2, chloroplastic protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 14323
95 % 5 6 14443
90 % 5 6 15155
70 % 5 6 13468
50 % 5 6 12425
40 % 448 547 36
30 % 448 547 39
Entity #5 | Chains: c
30S ribosomal protein S3, chloroplastic protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 16986
95 % 5 6 15700
90 % 5 6 14985
70 % 5 6 14545
50 % 5 6 13181
40 % 5 6 11983
30 % 143 177 309
Entity #6 | Chains: d
30S ribosomal protein S4, chloroplastic protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 14024
95 % 5 6 13976
90 % 5 6 13809
70 % 5 6 13068
50 % 5 6 11930
40 % 453 555 31
30 % 453 555 35
Entity #7 | Chains: e
30S ribosomal protein S5, chloroplastic protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34290
95 % 2 3 31002
90 % 2 3 29818
70 % 2 3 26606
50 % 2 3 23314
40 % 2 3 21517
30 % 2 3 19091
Entity #8 | Chains: f
plastid ribosomal protein bS6c protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 48884
95 % 2 2 44930
90 % 2 2 42710
70 % 2 2 37617
50 % 2 2 32541
40 % 2 2 29461
30 % 2 2 26064
Entity #9 | Chains: g
30S ribosomal protein S7, chloroplastic protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 17452
95 % 5 6 15900
90 % 5 6 15669
70 % 5 6 14718
50 % 5 6 13324
40 % 428 485 68
30 % 428 485 70

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures