Sequence Similarity Clusters for the Entities in PDB 5MMI

Entity #1 | Chains: 0
50S ribosomal protein L31 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29861
95 % 2 3 25248
90 % 2 3 24440
70 % 2 3 22368
50 % 2 4 15511
40 % 2 4 14363
30 % 2 4 12986
Entity #10 | Chains: B
5S ribosomal RNA rna, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: C
50S ribosomal protein L2, chloroplastic protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11222
95 % 5 8 11275
90 % 5 8 11159
70 % 5 8 10684
50 % 332 430 49
40 % 332 430 58
30 % 332 430 59
Entity #12 | Chains: D
plastid ribosomal protein uL3c protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32863
95 % 2 3 24966
90 % 2 3 24196
70 % 2 3 22161
50 % 2 3 21164
40 % 2 3 17851
30 % 2 3 17356
Entity #13 | Chains: E
plastid ribosomal protein uL4c protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 52812
95 % 2 4 23294
90 % 2 4 22599
70 % 2 4 20732
50 % 2 4 18322
40 % 2 4 16798
30 % 2 4 15071
Entity #14 | Chains: F
plastid ribosomal protein uL5c protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 52811
95 % 2 2 39865
90 % 2 2 38016
70 % 2 2 33833
50 % 2 2 29383
40 % 2 2 26591
30 % 2 2 23550
Entity #15 | Chains: G
plastid ribosomal protein uL6c protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32861
95 % 2 3 27411
90 % 2 3 26459
70 % 2 4 19881
50 % 2 4 17611
40 % 2 4 16213
30 % 2 4 14551
Entity #16 | Chains: H
plastid ribosomal protein bL9c protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32862
95 % 2 3 27412
90 % 2 3 26460
70 % 2 4 19882
50 % 2 4 17612
40 % 2 4 16214
30 % 2 4 14552
Entity #17 | Chains: I
plastid ribosomal protein uL10c protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 52827
95 % 2 2 39874
90 % 2 2 38028
70 % 2 2 33841
50 % 2 2 29392
40 % 2 2 26597
30 % 2 2 23556
Entity #18 | Chains: J
50S ribosomal protein L11, chloroplastic protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 33804
95 % 2 3 24444
90 % 2 3 24572
70 % 2 3 24613
50 % 2 3 21632
40 % 2 3 17511
30 % 2 3 17738
Entity #19 | Chains: K
50S ribosomal protein L13, chloroplastic protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19322
95 % 2 4 17664
90 % 2 4 17352
70 % 2 4 16371
50 % 2 4 14580
40 % 2 4 13559
30 % 2 4 12323
Entity #2 | Chains: 1
50S ribosomal protein L32, chloroplastic protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 11725
95 % 4 7 11799
90 % 4 7 11664
70 % 4 7 11132
50 % 4 7 10194
40 % 4 7 9605
30 % 4 7 8876
Entity #20 | Chains: L
50S ribosomal protein L14, chloroplastic protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9282
95 % 5 8 11366
90 % 5 8 9654
70 % 5 8 10758
50 % 337 443 44
40 % 337 443 51
30 % 337 443 52
Entity #21 | Chains: M
plastid ribosomal protein uL15c protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 33095
95 % 2 3 27572
90 % 2 3 26617
70 % 2 3 24202
50 % 2 4 17803
40 % 2 4 16362
30 % 2 4 14697
Entity #22 | Chains: N
50S ribosomal protein L16, chloroplastic protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11427
95 % 5 8 11445
90 % 5 8 10469
70 % 5 8 10828
50 % 332 431 47
40 % 332 431 56
30 % 332 431 57
Entity #23 | Chains: O
plastid ribosomal protein bL17c protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 12388
95 % 5 7 11973
90 % 5 7 11823
70 % 5 7 11614
50 % 5 7 10643
40 % 328 427 53
30 % 328 429 54
Entity #24 | Chains: P
plastid ribosomal protein uL18c protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30755
95 % 2 3 25920
90 % 2 3 26616
70 % 2 4 16202
50 % 2 4 17801
40 % 2 4 16360
30 % 2 4 14695
Entity #25 | Chains: Q
50S ribosomal protein L19, chloroplastic protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25931
95 % 2 4 22531
90 % 2 4 21919
70 % 2 4 20100
50 % 2 4 17802
40 % 2 4 16361
30 % 2 4 14696
Entity #26 | Chains: R
50S ribosomal protein L20, chloroplastic protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10921
95 % 5 8 11036
90 % 5 8 10941
70 % 5 8 10484
50 % 5 8 9642
40 % 337 438 52
30 % 337 438 53
Entity #27 | Chains: S
50S ribosomal protein L21, chloroplastic protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34259
95 % 2 4 23793
90 % 2 4 23083
70 % 2 4 21145
50 % 2 4 18671
40 % 2 4 17108
30 % 2 4 15346
Entity #28 | Chains: T
50S ribosomal protein L22, chloroplastic protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 15643
95 % 4 7 12315
90 % 4 7 11822
70 % 4 7 11613
50 % 4 7 10642
40 % 4 7 9797
30 % 4 7 9062
Entity #29 | Chains: U
50S ribosomal protein L23, chloroplastic protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22301
95 % 2 4 20657
90 % 2 4 20187
70 % 2 4 20099
50 % 2 4 17800
40 % 2 4 16359
30 % 2 4 14694
Entity #3 | Chains: 2
50S ribosomal protein L33, chloroplastic protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10431
95 % 5 8 10626
90 % 5 8 9982
70 % 5 8 9665
50 % 5 8 8971
40 % 5 8 8913
30 % 5 8 7958
Entity #30 | Chains: V
plastid ribosomal protein uL24c protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 37283
95 % 2 4 21695
90 % 2 4 17928
70 % 2 4 16676
50 % 2 4 14994
40 % 2 4 13927
30 % 2 4 12610
Entity #31 | Chains: W
4.5S ribosomal RNA rna, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: X
plastid ribosomal protein bL27c protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32241
95 % 2 3 26974
90 % 2 3 23968
70 % 2 4 16677
50 % 2 4 14995
40 % 2 4 13928
30 % 2 4 12611
Entity #33 | Chains: Y
plastid ribosomal protein bL28c protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30440
95 % 2 3 25584
90 % 2 3 25890
70 % 2 3 22622
50 % 2 4 16981
40 % 2 4 15652
30 % 2 4 14061
Entity #34 | Chains: Z
plastid ribosomal protein uL29c protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29148
95 % 2 3 24731
90 % 2 3 23967
70 % 2 3 21951
50 % 2 4 14993
40 % 2 4 13926
30 % 2 4 12609
Entity #35 | Chains: z
E-site tRNA rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: 3
50S ribosomal protein L34, chloroplastic protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20574
95 % 2 4 18031
90 % 2 4 18448
70 % 2 4 16477
50 % 2 4 14824
40 % 2 4 14229
30 % 2 4 12879
Entity #5 | Chains: 4
50S ribosomal protein L35, chloroplastic protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19391
95 % 2 4 17932
90 % 2 4 17609
70 % 2 4 16405
50 % 2 4 14763
40 % 2 4 13720
30 % 2 4 12455
Entity #6 | Chains: 5
50S ribosomal protein L36, chloroplastic protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 11813
95 % 5 7 11772
90 % 5 7 11640
70 % 187 202 130
50 % 272 369 79
40 % 272 369 95
30 % 272 369 94
Entity #7 | Chains: 6
plastid ribosomal protein cL37, PSRP5 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23040
95 % 4 4 20494
90 % 4 6 13832
70 % 4 6 13067
50 % 4 6 11892
40 % 4 6 11134
30 % 4 6 10209
Entity #8 | Chains: 7
50S ribosomal protein 6, chloroplastic protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 12957
95 % 4 6 13194
90 % 4 6 13058
70 % 4 6 12057
50 % 4 6 11308
40 % 4 6 10624
30 % 4 6 9757
Entity #9 | Chains: A
23S ribosomal RNA rna, length: 2810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures