Sequence Similarity Clusters for the Entities in PDB 5MFQ

Entity #1 | Chains: A,B
Glutamate receptor ionotropic, kainate 1,Glutamate receptor ionotropic, kainate 1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 18 1271
95 % 18 44 577 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.7
PDBFlex
90 % 18 44 604
70 % 35 88 274
50 % 105 295 45
40 % 107 298 50
30 % 108 301 49

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures