Sequence Similarity Clusters for the Entities in PDB 5MER

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 229 53
95 % 80 285 63 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 90 347 38
70 % 231 832 6
50 % 232 846 7
40 % 238 892 8
30 % 238 917 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 221 727 2
95 % 245 776 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 249 794 4
70 % 279 1098 4
50 % 284 1122 3
40 % 284 1122 3
30 % 284 1122 9
Entity #3 | Chains: C,F
ILE-LEU-ALA-LYS-PHE-LEU-HIS-GLU-LEU protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures