Sequence Similarity Clusters for the Entities in PDB 5MDG

Entity #1 | Chains: A,B,C,D,E,F,G,W
Gag protein protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 236
95 % 23 24 301
90 % 23 23 320
70 % 23 24 358
50 % 23 24 423
40 % 24 25 434
30 % 24 25 452
Entity #2 | Chains: H,I,J,a,b,f
Gag protein protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 35 274
95 % 44 46 265
90 % 45 47 275
70 % 45 47 317
50 % 49 51 361
40 % 49 51 378
30 % 49 51 390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures