Sequence Similarity Clusters for the Entities in PDB 5MA9

Entity #1 | Chains: B,D,F,H
Green fluorescent protein protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 2809
95 % 118 288 73 Flexibility: Low
Max RMSD: 22.5, Avg RMSD: 1.0
PDBFlex
90 % 122 334 36
70 % 122 340 42
50 % 122 341 75
40 % 122 342 92
30 % 122 342 92
Entity #2 | Chains: A,C,E,G
R11 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17763
95 % 2 5 8218 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 2 5 8164
70 % 2 17 1860
50 % 2 18 1853
40 % 2 18 1890
30 % 2 18 1925

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures