Sequence Similarity Clusters for the Entities in PDB 5M3H

Entity #1 | Chains: A
Polymerase acidic protein protein, length: 728 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12447
95 % 1 6 11850 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 1 6 12215
70 % 1 6 11673
50 % 1 6 10667
40 % 1 6 9657
30 % 2 18 2861
Entity #2 | Chains: B
RNA-directed RNA polymerase catalytic subunit protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12448
95 % 1 6 12368 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 6 12261
70 % 1 6 11674
50 % 2 18 2844
40 % 2 29 1671
30 % 2 29 1713
Entity #3 | Chains: C
Polymerase basic protein 2 protein, length: 797 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66279
95 % 1 6 11756 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 1 6 11698
70 % 1 6 11085
50 % 1 6 10806
40 % 1 6 9576
30 % 2 18 2868
Entity #4 | Chains: R
RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*U)-3') rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: V
RNA 5'-pAGUAGUAACAAGAGGG rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: X,Y
TYR-SER-PRO-THR-SEP-PRO protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 20632
95 % 1 3 18826
90 % 1 3 18438
70 % 1 3 17172
50 % 1 3 15354
40 % 1 3 14263
30 % 1 3 12880

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures