Sequence Similarity Clusters for the Entities in PDB 5LW1

Entity #1 | Chains: A,D,G
DD_232_11_D12 protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28549
95 % 1 1 24276 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 5 6 3756
70 % 13 17 1746
50 % 13 17 1750
40 % 13 17 1794
30 % 14 18 1800
Entity #2 | Chains: B,E,H
Mitogen-activated protein kinase 8 protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 4973
95 % 23 32 1338 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.7
PDBFlex
90 % 62 77 525
70 % 71 86 480
50 % 71 86 517
40 % 348 381 116
30 % 348 381 126
Entity #3 | Chains: C,F,I
C-Jun-amino-terminal kinase-interacting protein 1 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: L
Pepstatin protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures