Sequence Similarity Clusters for the Entities in PDB 5LSK

Entity #1 | Chains: A
Protein MIS12 homolog protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33649
95 % 2 2 27984 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.3
PDBFlex
90 % 2 2 26990
70 % 2 2 24513
50 % 2 2 21528
40 % 2 2 19703
30 % 2 2 17639
Entity #2 | Chains: B
Polyamine-modulated factor 1 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33447
95 % 2 2 25167 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.2
PDBFlex
90 % 2 2 26855
70 % 2 2 22286
50 % 2 2 21442
40 % 2 2 17967
30 % 2 2 16783
Entity #3 | Chains: D
Kinetochore-associated protein DSN1 homolog protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77591
95 % 1 1 54801
90 % 1 1 51781
70 % 1 1 45218
50 % 1 1 39101
40 % 1 1 35323
30 % 1 1 31103
Entity #4 | Chains: N
Kinetochore-associated protein NSL1 homolog protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69064
95 % 1 1 54799
90 % 1 1 51780
70 % 1 1 45216
50 % 1 1 39100
40 % 1 1 35322
30 % 1 1 31102
Entity #5 | Chains: P
Centromere protein C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29703
95 % 2 2 27845
90 % 2 2 26854
70 % 2 2 24400
50 % 2 2 21441
40 % 2 2 19626
30 % 2 2 17561

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures