Sequence Similarity Clusters for the Entities in PDB 5LI0

Entity #1 | Chains: a
16S ribosomal RNA rna, length: 1547 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: j
30S ribosomal protein S10 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 37306
95 % 7 7 12495
90 % 11 12 6330
70 % 21 22 3416
50 % 477 549 26
40 % 477 549 34
30 % 501 586 32
Entity #11 | Chains: k
30S ribosomal protein S11 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7719
95 % 9 9 8496
90 % 9 9 8436
70 % 14 15 5041
50 % 468 543 29
40 % 468 543 38
30 % 468 543 41
Entity #12 | Chains: l
30S ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63324
95 % 9 9 9306
90 % 9 9 9222
70 % 14 15 5139
50 % 479 565 22
40 % 479 565 28
30 % 479 565 33
Entity #13 | Chains: m
30S ribosomal protein S13 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 13113
95 % 6 6 13529
90 % 6 6 12754
70 % 11 12 6551
50 % 473 549 27
40 % 476 552 35
30 % 476 552 38
Entity #14 | Chains: n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8875
95 % 8 8 9567
90 % 8 8 9466
70 % 13 14 5493
50 % 342 355 89
40 % 342 355 103
30 % 342 355 103
Entity #15 | Chains: o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 8786
95 % 9 9 9373
90 % 9 9 9288
70 % 14 16 4901
50 % 482 561 23
40 % 482 561 30
30 % 482 561 34
Entity #16 | Chains: p
30S ribosomal protein S16 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 8769
95 % 9 9 9364
90 % 9 9 9287
70 % 9 9 9019
50 % 14 15 4811
40 % 14 15 4704
30 % 14 15 4550
Entity #17 | Chains: q
30S ribosomal protein S17 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7715
95 % 9 9 8488
90 % 9 9 8427
70 % 14 18 4192
50 % 18 22 3384
40 % 18 22 3370
30 % 18 22 3315
Entity #18 | Chains: r
30S ribosomal protein S18 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63326
95 % 1 1 48780
90 % 1 1 46299
70 % 1 1 40582
50 % 1 1 35116
40 % 1 1 31761
30 % 1 1 28101
Entity #19 | Chains: s
30S ribosomal protein S19 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8879
95 % 8 8 9572
90 % 8 8 9473
70 % 15 16 5088
50 % 475 550 24
40 % 475 550 32
30 % 475 550 36
Entity #2 | Chains: b
30S ribosomal protein S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 29726
95 % 4 4 24631
90 % 4 4 23903
70 % 7 8 11358
50 % 468 541 30
40 % 473 547 36
30 % 473 547 39
Entity #20 | Chains: t
30S ribosomal protein S20 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 8120
95 % 9 9 9236
90 % 9 9 9153
70 % 9 9 8898
50 % 10 10 7415
40 % 23 24 3138
30 % 152 212 234
Entity #21 | Chains: A
23S ribosomal RNA rna, length: 2918 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: B
5S ribosomal RNA rna, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2887
95 % 21 21 3587
90 % 21 21 3640
70 % 29 32 2234
50 % 394 474 45
40 % 394 474 57
30 % 394 474 60
Entity #24 | Chains: E
50S ribosomal protein L3 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 3033
95 % 21 21 3572
90 % 21 21 3627
70 % 21 21 3627
50 % 398 480 44
40 % 402 484 53
30 % 402 485 56
Entity #25 | Chains: F
50S ribosomal protein L4 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 3322
95 % 21 21 3586
90 % 21 21 3639
70 % 21 21 3637
50 % 29 32 2294
40 % 160 234 205
30 % 385 466 69
Entity #26 | Chains: G
50S ribosomal protein L5 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 3593
95 % 17 17 4413
90 % 17 17 4459
70 % 24 26 2682
50 % 386 469 48
40 % 386 469 62
30 % 386 469 64
Entity #27 | Chains: H
50S ribosomal protein L6 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 3773
95 % 19 19 3942
90 % 19 19 3989
70 % 19 19 3963
50 % 256 271 106
40 % 389 475 55
30 % 392 479 55
Entity #28 | Chains: M
50S ribosomal protein L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2859
95 % 21 21 3506
90 % 21 21 3566
70 % 21 21 3565
50 % 169 244 184
40 % 365 447 70
30 % 365 447 75
Entity #29 | Chains: N
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2854
95 % 21 21 3478
90 % 28 31 2235
70 % 44 51 1343
50 % 399 487 36
40 % 399 487 47
30 % 399 487 50
Entity #3 | Chains: c
30S ribosomal protein S3 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8892
95 % 8 8 9814
90 % 8 8 9491
70 % 13 14 5587
50 % 147 171 275
40 % 147 171 290
30 % 152 177 297
Entity #30 | Chains: O
50S ribosomal protein L15 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2916
95 % 21 21 3637
90 % 21 21 3716
70 % 28 31 2387
50 % 233 243 118
40 % 387 469 64
30 % 387 469 66
Entity #31 | Chains: P
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2862
95 % 21 21 3518
90 % 21 21 3576
70 % 26 27 2668
50 % 391 472 47
40 % 391 472 59
30 % 391 472 62
Entity #32 | Chains: Q
50S ribosomal protein L17 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2780
95 % 21 21 3505
90 % 21 21 3565
70 % 29 32 2238
50 % 29 32 2290
40 % 390 471 52
30 % 390 473 54
Entity #33 | Chains: R
50S ribosomal protein L18 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2863
95 % 21 21 3519
90 % 21 21 3577
70 % 27 30 2418
50 % 374 454 54
40 % 358 435 73
30 % 358 435 78
Entity #34 | Chains: S
50S ribosomal protein L19 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2913
95 % 21 21 3563
90 % 21 21 3622
70 % 29 32 2221
50 % 172 248 182
40 % 172 248 195
30 % 172 248 203
Entity #35 | Chains: T
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2791
95 % 21 21 3542
90 % 21 21 3620
70 % 29 32 2266
50 % 392 474 42
40 % 399 482 49
30 % 399 482 51
Entity #36 | Chains: U
50S ribosomal protein L21 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2796
95 % 21 21 3562
90 % 21 21 3621
70 % 28 31 2367
50 % 251 261 111
40 % 391 469 63
30 % 391 469 65
Entity #37 | Chains: V
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 17 3859
95 % 21 21 3489
90 % 21 21 3554
70 % 28 31 2379
50 % 360 443 56
40 % 360 443 72
30 % 360 443 76
Entity #38 | Chains: W
50S ribosomal protein L23 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2929
95 % 21 21 3485
90 % 21 21 3551
70 % 21 21 3553
50 % 29 32 2310
40 % 385 471 61
30 % 385 471 63
Entity #39 | Chains: X
50S ribosomal protein L24 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2908
95 % 21 21 3627
90 % 21 21 3687
70 % 28 31 2376
50 % 363 447 53
40 % 363 449 69
30 % 363 449 74
Entity #4 | Chains: d
30S ribosomal protein S4 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7710
95 % 9 9 8480
90 % 9 9 8415
70 % 13 14 5642
50 % 346 360 88
40 % 481 555 31
30 % 481 555 35
Entity #40 | Chains: Y
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 8326
95 % 9 9 8967
90 % 9 9 8422
70 % 9 9 8166
50 % 9 9 7671
40 % 9 9 7414
30 % 10 10 6574
Entity #41 | Chains: Z
50S ribosomal protein L27 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2811
95 % 21 21 3602
90 % 27 28 2576
70 % 26 27 2645
50 % 392 471 46
40 % 392 471 58
30 % 392 471 61
Entity #42 | Chains: 0
50S ribosomal protein L28 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79835
95 % 1 1 50742
90 % 1 1 48084
70 % 1 1 42083
50 % 1 1 36375
40 % 1 1 32869
30 % 1 1 29065
Entity #43 | Chains: 1
50S ribosomal protein L29 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2773
95 % 21 21 3589
90 % 21 21 3691
70 % 28 31 2289
50 % 37 40 1754
40 % 37 40 1803
30 % 37 40 1821
Entity #44 | Chains: 2
50S ribosomal protein L30 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2857
95 % 21 21 3491
90 % 21 21 3557
70 % 27 29 2479
50 % 182 256 179
40 % 381 464 66
30 % 381 464 68
Entity #45 | Chains: 3
50S ribosomal protein L31 type B protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24801
95 % 4 4 19968
90 % 4 4 19521
70 % 6 6 15109
50 % 5 5 14236
40 % 9 9 8067
30 % 9 9 7561
Entity #46 | Chains: 4
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 8180
95 % 10 10 9184
90 % 10 10 9096
70 % 17 20 4098
50 % 28 31 2417
40 % 29 32 2331
30 % 378 457 72
Entity #47 | Chains: 5
50S ribosomal protein L33 2 protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60465
95 % 1 1 45285
90 % 1 1 43042
70 % 1 1 42081
50 % 1 1 36373
40 % 1 1 29721
30 % 1 1 29063
Entity #48 | Chains: 6
50S ribosomal protein L34 protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2797
95 % 21 21 3571
90 % 21 21 3626
70 % 28 31 2305
50 % 391 468 49
40 % 391 468 65
30 % 391 468 67
Entity #49 | Chains: 7
50S ribosomal protein L35 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2827
95 % 21 21 3604
90 % 21 21 3662
70 % 25 26 2858
50 % 148 216 201
40 % 149 217 217
30 % 149 217 226
Entity #5 | Chains: e
30S ribosomal protein S5 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7734
95 % 9 9 8774
90 % 9 9 8704
70 % 15 19 3932
50 % 469 545 28
40 % 469 545 37
30 % 469 545 40
Entity #50 | Chains: 8
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 18 3496
95 % 18 18 4212
90 % 22 23 3179
70 % 202 212 135
50 % 329 408 77
40 % 329 408 93
30 % 329 408 93
Entity #6 | Chains: f
30S ribosomal protein S6 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7709
95 % 9 9 8479
90 % 9 9 8414
70 % 9 9 8163
50 % 15 16 4467
40 % 15 16 4450
30 % 25 28 2517
Entity #7 | Chains: g
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8893
95 % 8 8 9585
90 % 8 8 9492
70 % 14 15 5194
50 % 443 479 51
40 % 448 485 67
30 % 448 485 70
Entity #8 | Chains: h
30S ribosomal protein S8 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7708
95 % 9 9 8478
90 % 9 9 8413
70 % 15 16 4625
50 % 348 364 84
40 % 483 560 29
30 % 628 760 21
Entity #9 | Chains: i
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8894
95 % 8 8 9586
90 % 8 8 9493
70 % 13 14 5659
50 % 464 538 31
40 % 464 538 39
30 % 464 538 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures