Sequence Similarity Clusters for the Entities in PDB 5LF0

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 43 513
95 % 10 51 565 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 10 51 592
70 % 10 51 623
50 % 10 55 597
40 % 13 366 43
30 % 77 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 42 534
95 % 10 51 568 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 51 589
70 % 10 51 617
50 % 10 51 668
40 % 13 360 48
30 % 13 362 49
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 25 921
95 % 10 27 1086 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 10 27 1123
70 % 13 312 27
50 % 13 316 62
40 % 13 316 81
30 % 16 339 31
Entity #12 | Chains: L,Z
Proteasome subunit beta type-1 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 25 932
95 % 10 29 981 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 29 1022
70 % 10 29 1051
50 % 10 29 1085
40 % 10 29 1118
30 % 10 29 1162
Entity #13 | Chains: M,a
Proteasome subunit beta type-4 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 24 975
95 % 10 29 998 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 29 1040
70 % 10 29 1065
50 % 10 29 1101
40 % 10 31 1067
30 % 10 31 1114
Entity #14 | Chains: N,b
Proteasome subunit beta type-6 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 24 968
95 % 10 26 1114 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 26 1154
70 % 10 26 1175
50 % 10 26 1204
40 % 10 26 1241
30 % 10 26 1283
Entity #15 | Chains: c,d,e,f,g,h
EPOXOMICIN (peptide inhibitor) protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,P
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 43 514
95 % 10 51 566 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 10 51 590
70 % 10 51 619
50 % 13 364 37
40 % 13 366 44
30 % 78 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-7 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 42 537
95 % 10 52 560 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 10 52 583
70 % 10 52 616
50 % 13 363 38
40 % 16 393 17
30 % 79 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 46 454
95 % 10 51 563 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 10 51 585
70 % 10 51 612
50 % 13 365 36
40 % 13 365 46
30 % 80 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 42 532
95 % 10 52 556 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 10 52 577
70 % 10 52 607
50 % 10 52 654
40 % 10 52 681
30 % 10 52 725
Entity #6 | Chains: F,T
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 440
95 % 10 52 470 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 10 52 497
70 % 10 52 530
50 % 11 97 323
40 % 11 99 328
30 % 81 2273 2
Entity #7 | Chains: G,U
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 48 487
95 % 10 52 567 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 10 52 591
70 % 10 52 620
50 % 13 361 42
40 % 13 367 45
30 % 82 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-7 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 23 1014
95 % 10 36 756 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 10 36 786
70 % 10 36 838
50 % 13 339 53
40 % 13 339 71
30 % 13 339 72
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 42 538
95 % 10 51 555 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 51 587
70 % 10 51 615
50 % 13 357 43
40 % 13 363 47
30 % 13 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures