Sequence Similarity Clusters for the Entities in PDB 5LEZ

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 43 514
95 % 9 51 560 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 9 51 580
70 % 9 51 610
50 % 9 55 597
40 % 10 366 43
30 % 56 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 42 531
95 % 9 51 565 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 51 584
70 % 9 51 616
50 % 9 51 659
40 % 10 360 48
30 % 10 362 49
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 930
95 % 9 27 1064 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 9 27 1092
70 % 10 312 28
50 % 10 316 62
40 % 10 316 80
30 % 11 339 30
Entity #12 | Chains: L,Z
Proteasome subunit beta type-1 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 936
95 % 9 29 985 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 29 1023
70 % 9 29 1052
50 % 9 29 1086
40 % 9 29 1127
30 % 9 29 1170
Entity #13 | Chains: M,a
Proteasome subunit beta type-4 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 977
95 % 9 29 982 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 29 1021
70 % 9 29 1050
50 % 9 29 1084
40 % 9 31 1054
30 % 9 31 1098
Entity #14 | Chains: N,b
Proteasome subunit beta type-6 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 980
95 % 9 26 1116 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 26 1149
70 % 9 26 1177
50 % 9 26 1205
40 % 9 26 1257
30 % 9 26 1293
Entity #15 | Chains: c,d,e,f
bound Oprozomib protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,P
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 43 509
95 % 9 51 567 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 9 51 587
70 % 9 51 619
50 % 10 364 37
40 % 10 366 45
30 % 57 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-7 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 42 533
95 % 9 52 568 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 9 52 589
70 % 9 52 613
50 % 10 363 38
40 % 11 393 17
30 % 58 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 46 453
95 % 9 51 563 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 9 51 582
70 % 9 51 612
50 % 10 365 36
40 % 10 365 46
30 % 59 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 42 532
95 % 9 52 559 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 9 52 579
70 % 9 52 626
50 % 9 52 656
40 % 9 52 694
30 % 9 52 731
Entity #6 | Chains: F,T
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 44 437
95 % 9 52 470 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 9 52 496
70 % 9 52 529
50 % 9 97 322
40 % 9 99 327
30 % 60 2273 2
Entity #7 | Chains: G,U
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 48 483
95 % 9 52 561 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 9 52 581
70 % 9 52 611
50 % 10 361 41
40 % 10 367 44
30 % 61 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-7 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 23 1035
95 % 9 36 765 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 9 36 799
70 % 9 36 836
50 % 10 339 53
40 % 10 339 71
30 % 10 339 72
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 42 529
95 % 9 51 566 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 51 585
70 % 9 51 617
50 % 10 357 43
40 % 10 363 47
30 % 10 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures